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公开(公告)号:US20210139884A1
公开(公告)日:2021-05-13
申请号:US17120030
申请日:2020-12-11
发明人: Matthew KELLINGER , Molly HE , Tyler LOPEZ
摘要: Provided herein are compositions and methods for the incorporation of unnatural nucleotides using mutant polymerases, such as reverse transcriptases. Further provided herein are methods of detection and sequencing of polynucleotide sequences. In some aspects, the compositions and methods are used enhance the efficiency and speed of detecting nucleotide bases. The methods and compositions described herein may further reduce time, cost, or scale of devices for next generation sequencing platforms.
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公开(公告)号:US10768173B1
公开(公告)日:2020-09-08
申请号:US16579794
申请日:2019-09-23
发明人: Sinan Arslan , Molly He , Matthew Kellinger , Jake Levieux , Michael Previte , Junhua Zhao , Su Zhang
IPC分类号: C12Q1/6869 , C07H21/00 , G01N33/53 , G01N33/58 , C12Q1/6874
摘要: Multivalent binding compositions including a particle-nucleotide conjugate having a plurality of copies of a nucleotide attached to the particle are described. The multivalent binding compositions allow one to localize detectable signals to active regions of biochemical interaction, e.g., sites of protein-protein interaction, protein-nucleic acid interaction, nucleic acid hybridization, or enzymatic reaction, and can be used to identify sites of base incorporation in elongating nucleic acid chains during polymerase reactions and to provide improved base discrimination for sequencing and array based applications.
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公开(公告)号:US20200182866A1
公开(公告)日:2020-06-11
申请号:US16739007
申请日:2020-01-09
发明人: Sinan ARSLAN , Chunhong ZHOU , Molly Min HE , Matthew KELLINGER , Adeline Huizhen MAH , Michael PREVITE , Lei SUN
IPC分类号: G01N33/543 , C12Q1/6844 , G01N21/64
摘要: Improved system and method are described that utilize surfaces with low non-specific binding supports and formulations for performing solid-phase nucleic acid hybridization and amplification. The system and method described herein provide improved performance for nucleic acid detection and other applications.
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公开(公告)号:US20240200133A1
公开(公告)日:2024-06-20
申请号:US18417983
申请日:2024-01-19
发明人: Arash GHORBANI , Russell HUDYMA , John BAILEY , Michael PREVITE
IPC分类号: C12Q1/6874
CPC分类号: C12Q1/6874
摘要: Fluorescence imaging system designs are described that provide larger fields-of-view, increased spatial resolution, improved modulation transfer and image quality, higher spatial sampling frequency, faster transitions between image capture when repositioning the fields-of-view, improved imaging system duty cycle and a more compact system, and thus enable higher throughput image acquisition and analysis for genomics and other imaging applications at a lower cost.
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公开(公告)号:US20240052398A1
公开(公告)日:2024-02-15
申请号:US18450200
申请日:2023-08-15
发明人: Michael PREVITE , Shawn LEVY
IPC分类号: C12Q1/6806 , C12Q1/6874 , C12Q1/6844
CPC分类号: C12Q1/6806 , C12Q1/6874 , C12Q1/6844
摘要: The present disclosure provides compositions, apparatuses and methods for capturing on a support nucleic acids from cellular samples, preparing library molecules on the support, amplifying the library molecules on the support to generate nucleic acid template molecules, and analyzing the immobilized nucleic acid template molecules including detecting and/or sequencing the immobilized nucleic acid template molecules. The immobilized nucleic acid template molecules correspond to the nucleic acids from the cellular samples. The immobilized nucleic acid template molecules are spatially located on the support at positions that correspond to the spatial location of the nucleic acids from the cellular sample.
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公开(公告)号:US11891651B2
公开(公告)日:2024-02-06
申请号:US17521239
申请日:2021-11-08
发明人: Sinan Arslan , Junhua Zhao , Molly He , Samantha Snow , William Light , Matthew Kellinger , Michael Previte , Michael Kim , Hua Yu , Yu-Hsien Hwang-Fu , Marco Tjioe , Andrew Boddicker
IPC分类号: C12Q1/68 , C12Q1/6806 , C12Q1/6834 , C12Q1/6874 , G01N21/64 , C12Q1/6853
CPC分类号: C12Q1/6806 , C12Q1/6834 , C12Q1/6853 , C12Q1/6874 , G01N21/6428 , G01N21/6458 , C12Q2600/158
摘要: The present disclosure provides compositions and methods that employ the compositions for conducting pairwise sequencing and for generating concatemer template molecules for pairwise sequencing. The concatemers can be generated using a rolling circle amplification reaction which is conducted either on-support, or conducted in-solution and then distributed onto a support. The rolling circle amplification reaction generates concatemers containing tandem copies of a sequence of interest and at least one universal adaptor sequence. An increase in the number of tandem copies in a given concatemer increases the number of sites along the concatemer for hybridizing to multiple sequencing primers which serve as multiple initiation sites for polymerase-catalyzed sequencing reactions. When the sequencing reaction employs detectably labeled nucleotides and/or detectably labeled multivalent molecules (e.g., having nucleotide units), the signals emitted by the nucleotides or nucleotide units that participate in the parallel sequencing reactions along the concatemer yields an increased signal intensity for each concatemer.
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公开(公告)号:US11859241B2
公开(公告)日:2024-01-02
申请号:US18166429
申请日:2023-02-08
发明人: Sinan Arslan , Junhua Zhao , Molly He , Samantha Snow , William Light , Matthew Kellinger , Michael Previte , Michael Kim , Hua Yu , Yu-Hsien Hwang-Fu , Marco Tjioe , Andrew Boddicker , Mark Ambroso , Tyler Lopez , Michael Klein , Virginia Saade
IPC分类号: C12Q1/68 , C12P19/34 , C12Q1/6806 , C12Q1/6834 , C12Q1/6874 , G01N21/64 , C12Q1/6853
CPC分类号: C12Q1/6806 , C12Q1/6834 , C12Q1/6853 , C12Q1/6874 , G01N21/6428 , G01N21/6458 , C12Q2600/158
摘要: The present disclosure provides compositions and methods that employ the compositions for conducting pairwise sequencing and for generating concatemer template molecules for pairwise sequencing. The concatemers can be generated using a rolling circle amplification reaction which is conducted either on-support, or conducted in-solution and then distributed onto a support. The rolling circle amplification reaction generates concatemers containing tandem copies of a sequence of interest and at least one universal adaptor sequence. An increase in the number of tandem copies in a given concatemer increases the number of sites along the concatemer for hybridizing to multiple sequencing primers which serve as multiple initiation sites for polymerase-catalyzed sequencing reactions. When the sequencing reaction employs detectably labeled nucleotides and/or detectably labeled multivalent molecules (e.g., having nucleotide units), the signals emitted by the nucleotides or nucleotide units that participate in the parallel sequencing reactions along the concatemer yields an increased signal intensity for each concatemer.
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公开(公告)号:US11795504B2
公开(公告)日:2023-10-24
申请号:US17574416
申请日:2022-01-12
IPC分类号: C12Q1/6869 , G01N21/64 , G01N15/14 , C12N15/10 , C12Q1/6806
CPC分类号: C12Q1/6869 , C12N15/1006 , C12Q1/6806 , G01N15/147 , G01N15/1436 , G01N15/1484 , G01N21/6402 , G01N21/6428 , G01N21/6456 , G01N21/6458 , G01N21/6486 , G01N2015/144 , G01N2021/6439 , G01N2021/6441 , G01N2021/6463 , G01N2201/0612
摘要: Fluorescence imaging system designs are described that provide larger fields-of-view, increased spatial resolution, improved modulation transfer and image quality, higher spatial sampling frequency, faster transitions between image capture when repositioning the sample plane to capture a series of images (e.g., of different fields-of-view), and improved imaging system duty cycle, and thus enable higher throughput image acquisition and analysis for genomics and other imaging applications.
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公开(公告)号:US20230265401A1
公开(公告)日:2023-08-24
申请号:US18160951
申请日:2023-01-27
发明人: Jendrik HENTSHCEL , Tyler LOPEZ , Michael KLEIN , Virginia SAADE , Matthew KELLINGER , Mark AMBROSO
IPC分类号: C12N9/12 , C12Q1/6869
CPC分类号: C12N9/1252 , C12Y207/07007 , C12Q1/6869
摘要: Provided herein are engineered variants of archaeal polymerases that exhibit exonuclease-minus activity, enhanced thermostability, enhanced incorporation of 3′ modified nucleotides, improved uracil-tolerance and/or reduce sequence-specific errors in polymerase-catalyzed nucleotide binding and extension reactions relative to wild type polymerase enzymes. Also provided are uses of the engineered polymerases for forming complexed polymerases and forming binding complexes, and uses for conducting nucleic acid sequencing reactions.
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公开(公告)号:US11535892B1
公开(公告)日:2022-12-27
申请号:US17377279
申请日:2021-07-15
发明人: Sinan Arslan , Junhua Zhao , Molly He , Samantha Snow , William Light , Matthew Kellinger , Michael Previte , Michael Kim , Hua Yu , Yu-Hsien Hwang-Fu , Marco Tjioe , Andrew Boddicker
IPC分类号: C12Q1/6853 , C12Q1/6874
摘要: The present disclosure provides compositions and methods that employ the compositions for conducting pairwise sequencing and for generating concatemer template molecules for pairwise sequencing. The concatemers can be generated using a rolling circle amplification reaction which is conducted either on-support, or conducted in-solution and then distributed onto a support. The rolling circle amplification reaction generates concatemers containing tandem copies of a sequence of interest and at least one universal adaptor sequence. An increase in the number of tandem copies in a given concatemer increases the number of sites along the concatemer for hybridizing to multiple sequencing primers which serve as multiple initiation sites for polymerase-catalyzed sequencing reactions. When the sequencing reaction employs detectably labeled nucleotides and/or detectably labeled multivalent molecules (e.g., having nucleotide units), the signals emitted by the nucleotides or nucleotide units that participate in the parallel sequencing reactions along the concatemer yields an increased signal intensity for each concatemer.
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