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公开(公告)号:US20230041481A1
公开(公告)日:2023-02-09
申请号:US17835220
申请日:2022-06-08
发明人: Carl Lars Genghis HANSEN , Georgia Elizabeth MEWIS , Kevin Albert HEYRIES , Michael Andrew VANINSBERGHE , Daniel Jay DA COSTA , Marketa RICICOVA
IPC分类号: C40B30/04 , G16B30/00 , G16B40/00 , C40B20/00 , G01N33/68 , C07K14/725 , G16B30/20 , G16B30/10 , C12Q1/6876
摘要: Provided herein are high-throughput sequencing methods to study the diversity and functionality of lymphocyte receptor chains and pairing of the same. Specifically, the methods provided herein are used to identify with confidence one or more lymphocyte receptor chain pairs in a sample, for example one or more functional chain pairs.
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公开(公告)号:US10984891B2
公开(公告)日:2021-04-20
申请号:US15669113
申请日:2017-08-04
发明人: Xiang-Dong Fu , Bing Zhou , Xiao Li
IPC分类号: C12Q1/6874 , C40B20/00 , G16Z99/00 , G16B30/00 , C12Q1/6816
摘要: A method to detect chromatin-interacting RNAs in any given state of a cell or tissue by examining global RNA interactions with DNA by deep sequencing. A method to generate a global view of chromatin-RNA interactome by mapping the binding locations on the genome of each detected chromatin interacting RNA.
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公开(公告)号:US20210054530A1
公开(公告)日:2021-02-25
申请号:US16612132
申请日:2018-05-11
发明人: Daniel James Scott , Ross Bathgate
摘要: Provided herein are methods for selecting polypeptides or proteins having one or more desired properties from a library of sequences expressed in eukaryotic cells, comprising: encapsulating said cells by photopolymerization; solubilizing said encapsulated cells to produce semipermeable microcapsules; optionally contacting said cells and/or said microcapsules with one or more agents to facilitate detection of activity or function of polypeptides or proteins of interest; and selecting polypeptides or proteins of interest having one or more desired properties. Also provided are methods for encapsulating eukaryotic cells for use in the selection of polypeptides and proteins as described above.
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公开(公告)号:US10704084B2
公开(公告)日:2020-07-07
申请号:US15529807
申请日:2015-12-02
申请人: TriBiotica LLC
发明人: Ian Dunn , Matthew Lawler
IPC分类号: C12Q1/68 , C12Q1/6816 , C12N15/10 , C40B20/00 , C40B40/00
摘要: The present disclosure is directed to methods and kits for identifying, enriching, and evaluating templated assembly reactants. Some embodiments disclose methods for identifying templated assembly targets by synthesizing templated assembly reactants, hybridizing the templated assembly reactants to target nucleic acids, performing a templated assembly reaction, and identifying the target nucleic acids that hybridized to the templated assembly reactants. Libraries of templated assembly reactants, a kit for identifying templated assembly targets, and a pair of templated assembly targets enriched from a library of chemically-ligated oligonucleotides spatially elicited (CLOSE) products are also disclosed.
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公开(公告)号:US10023910B2
公开(公告)日:2018-07-17
申请号:US15136780
申请日:2016-04-22
发明人: Radoje Drmanac , Brock A. Peters , Andrei Alexeev
IPC分类号: C40B20/00 , C40B50/06 , C12Q1/68 , C07H21/02 , C12Q1/6869 , C12Q1/6806 , C12N15/10
摘要: This disclosure provides methods and compositions for tagging long fragments of a target nucleic acid for sequencing and analyzing the resulting sequence information in order to reduce errors and perform haplotype phasing, for example.
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公开(公告)号:US09938641B2
公开(公告)日:2018-04-10
申请号:US11959435
申请日:2007-12-18
IPC分类号: C40B20/00 , C40B30/04 , C40B20/08 , C12N15/115 , C40B40/08
CPC分类号: C40B20/08 , C07B2200/11 , C12N15/115 , C12N2310/16 , C12N2320/10 , C40B30/04 , C40B40/08
摘要: Disclosed are methods for performing aptamer preselection based on unique geometry and the content of stems or loops of the aptamer, which methods are capable of providing suitable binders and also permit selection of aptamers performed essentially entirely on a chip or other device. Also disclosed are kits for aptamer selection.
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公开(公告)号:US09677130B2
公开(公告)日:2017-06-13
申请号:US13397572
申请日:2012-02-15
申请人: Kai Wang , Shile Zhang , David Galas
发明人: Kai Wang , Shile Zhang , David Galas
CPC分类号: C12Q1/6851 , C12Q1/6883 , C12Q2600/178 , C40B20/00 , C12Q2525/173 , C12Q2525/191 , C12Q2525/207
摘要: Improved methods to quantitate RNA in biological or other analytical samples employ extended RNAs containing adaptors at the 5′ end and polyA sequences coupled to a tag at the 3′ end. The invention method is particularly useful in quantitating microRNAs as primers can be used that need not complement the non-conserved 3′ ends of these molecules.
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公开(公告)号:US09328383B2
公开(公告)日:2016-05-03
申请号:US14699891
申请日:2015-04-29
申请人: Keygene N.V.
CPC分类号: C12Q1/6874 , C12Q1/6827 , C12Q1/6855 , C12Q1/6869 , C12Q1/6876 , C12Q1/6883 , C12Q2600/156 , C12Q2600/16 , C12Q2565/301 , C12Q2535/138 , C12Q2535/122 , C12Q2527/107
摘要: The invention relates to a method for the high throughput discovery, detection and genotyping of one or more genetic markers in one or more samples, comprising the steps of restriction endonuclease digest of DNA, adaptor-ligation, optional pre-amplification, selective amplification, pooling of the amplified products, sequencing the libraries with sufficient redundancy, clustering followed by identification of the genetic markers within the library and/or between libraries and determination of (co-)dominant genotypes of the genetic markers.
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公开(公告)号:US08916503B2
公开(公告)日:2014-12-23
申请号:US10589052
申请日:2005-02-17
CPC分类号: C12Q1/6841 , C12Q2525/207 , C12Q2525/301 , C12Q2563/137 , C12Q2563/155 , C12Q2565/1015 , C12Q2565/102
摘要: Methods of isolating cells or generating cell lines comprising the step of exposing the cells to signaling probes that produce a signal upon hybridization to a target sequence, as well as methods of quantifying the level of expression of an RNA of interest, methods for identifying genetic recombinational events in living cells and methods of generating a transgenic animal using the isolated cells. Methods for isolating a plurality of cells encoding a plurality of different RNAs associated with a same nucleic acid tag sequence, comprising the step of exposing the cells to a same signaling probe that produces a detectable signal upon hybridization to the same nucleic acid tag sequence, are also provided. Signaling probes and protease probes that form stem-loop structures, three-arm junction structures, and dumbbell structures may be used in the above methods.
摘要翻译: 分离细胞或产生细胞系的方法包括将细胞暴露于与靶序列杂交时产生信号的信号传导探针的步骤,以及定量目的RNA表达水平的方法,用于鉴定遗传重组的方法 活细胞中的事件和使用分离的细胞产生转基因动物的方法。 用于分离编码与相同核酸标签序列相关联的多个不同RNA的多个细胞的方法包括将细胞暴露于与同一核酸标签序列杂交时产生可检测信号的相同信号探针的步骤是 也提供。 在上述方法中可以使用形成茎环结构,三臂连接结构和哑铃结构的信号探针和蛋白酶探针。
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公开(公告)号:US08911945B2
公开(公告)日:2014-12-16
申请号:US14318352
申请日:2014-06-27
申请人: Keygene N.V.
CPC分类号: C12Q1/6874 , C12Q1/6827 , C12Q1/6855 , C12Q1/6869 , C12Q1/6876 , C12Q1/6883 , C12Q2600/156 , C12Q2600/16 , C12Q2565/301 , C12Q2535/138 , C12Q2535/122 , C12Q2527/107
摘要: The invention relates to a method for the high throughput discovery, detection and genotyping of one or more genetic markers in one or more samples, comprising the steps of restriction endonuclease digest of DNA, adaptor-ligation, optional pre-amplification, selective amplification, pooling of the amplified products, sequencing the libraries with sufficient redundancy, clustering followed by identification of the genetic markers within the library and/or between libraries and determination of (co-)dominant genotypes of the genetic markers.
摘要翻译: 本发明涉及一种用于一种或多种样品中一种或多种遗传标记物的高通量发现,检测和基因分型的方法,其包括以下步骤:DNA的限制性内切核酸酶消化,衔接子连接,任选的预扩增,选择性扩增,合并 的扩增产物,对文库以足够的冗余进行测序,聚类,然后鉴定文库内和/或文库之间的遗传标记和确定遗传标记的(共)优势基因型。
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