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公开(公告)号:US12062419B2
公开(公告)日:2024-08-13
申请号:US17683426
申请日:2022-03-01
申请人: ILLUMINA, INC.
发明人: Craig Ciesla , Ali Agah , Stanley Hong , Tarun Khurana , Aathavan Karunakaran , Arvin Emadi , Merek Siu
IPC分类号: G16B50/30 , B01L3/00 , G11C13/02 , G16B30/10 , C12Q1/6874
CPC分类号: G16B50/30 , B01L3/5027 , G11C13/02 , G16B30/10 , C12Q1/6874
摘要: A system writes input data to a storage device as machine-written polynucleotides; and reads machine written polynucleotides from the storage device as output data. The storage device includes a flow cell including a plurality of storage wells in which machine written polynucleotides may be stored. The storage device may include a set of electrodes corresponding to the storage wells that allow for selective interactions with wells across the surface of a flow cell. Operation of the storage device may include receiving a read request associated with a particular location in the storage device, creating a copy of a nucleotide sequence located at the particular location in the storage device, transferring the copy of the nucleotide sequence to a read location, and reading the copy of the nucleotide sequence at the read location.
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公开(公告)号:US11874214B1
公开(公告)日:2024-01-16
申请号:US18179525
申请日:2023-03-07
申请人: Illumina, Inc.
发明人: Helmy A. Eltoukhy , Robert C. Kain , Wenyi Feng , Mark Pratt , Bernard Hirschbein , Poorya Sabounchi , Tarun Khurana
IPC分类号: G01N15/14 , C12Q1/6874 , B01L3/00
CPC分类号: G01N15/1434 , B01L3/502715 , C12Q1/6874 , G01N15/1404 , B01L2300/0654 , B01L2300/168
摘要: A biosensor is provided including a detection device and a flow cell mounted to the detection device. The detection device has a detector surface with a plurality of reaction sites. The detection device also includes a filter layer. A method is providing including obtaining signal data from an array of light detectors; determining a crosstalk function for each of the light detectors of the array of light detectors; and determining characteristics of analytes of interest based on the signal data using the crosstalk functions.
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3.
公开(公告)号:US20230272457A1
公开(公告)日:2023-08-31
申请号:US18179026
申请日:2023-03-06
申请人: ILLUMINA, INC.
发明人: Boyan Boyanov , Liangliang Qiang , Kevin L. Gunderson , Kay Klausing , Lea Pickering , Cyril Delattre , Tarun Khurana
IPC分类号: C12Q1/6818 , C12Q1/6874 , C12Q1/6816
CPC分类号: C12Q1/6818 , C12Q1/6874 , C12Q1/6816 , C12Q2533/101 , C12Q2535/113 , C12Q2535/122 , C12Q2563/103 , C12Q2563/125
摘要: Under one aspect, a composition includes a substrate; a first polynucleotide coupled to the substrate; a second polynucleotide hybridized to the first polynucleotide; and a catalyst coupled to a first nucleotide of the second polynucleotide, the catalyst being operable to cause a chemiluminogenic molecule to emit a photon. Under another aspect, a method includes providing a catalyst operable to cause a first chemiluminogenic molecule to emit a photon; providing a substrate; providing a first polynucleotide coupled to the substrate; hybridizing a second polynucleotide to the first polynucleotide; coupling a first quencher to a first nucleotide of the second polynucleotide; and inhibiting, by the first quencher, photon emission by the first chemiluminogenic molecule.
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4.
公开(公告)号:US11590494B2
公开(公告)日:2023-02-28
申请号:US16433969
申请日:2019-06-06
申请人: Illumina, inc.
发明人: Alex Aravanis , Boyan Boyanov , M. Shane Bowen , Dale Buermann , Alexander Hsiao , Behnam Javanmardi , Tarun Khurana , Poorya Sabounchi , Hai Quang Tran
摘要: Systems and methods for conducting designated reactions utilizing a base instrument and a removable cartridge. The removable cartridge includes a fluidic network that receives and fluidically directs a biological sample to conduct the designated reactions. The removable cartridge also includes a flow-control valve that is operably coupled to the fluidic network and is movable relative to the fluidic network to control flow of the biological sample therethrough. The removable cartridge is configured to separably engage a base instrument. The base instrument includes a valve actuator that engages the flow-control valve of the removable cartridge. A detection assembly held by at least one of the removable cartridge or the base instrument may be used to detect the designated reactions.
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公开(公告)号:US20220254452A1
公开(公告)日:2022-08-11
申请号:US17683426
申请日:2022-03-01
申请人: ILLUMINA, INC.
发明人: Craig Ciesla , Ali Agah , Stanley Hong , Tarun Khurana , Aathavan Karunakaran , Arvin Emadi , Merek Siu
摘要: A system writes input data to a storage device as machine-written polynucleotides; and reads machine written polynucleotides from the storage device as output data. The storage device includes a flow cell including a plurality of storage wells in which machine written polynucleotides may be stored. The storage device may include a set of electrodes corresponding to the storage wells that allow for selective interactions with wells across the surface of a flow cell. Operation of the storage device may include receiving a read request associated with a particular location in the storage device, creating a copy of a nucleotide sequence located at the particular location in the storage device, transferring the copy of the nucleotide sequence to a read location, and reading the copy of the nucleotide sequence at the read location.
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公开(公告)号:US11376584B2
公开(公告)日:2022-07-05
申请号:US16400629
申请日:2019-05-01
申请人: Illumina, Inc.
发明人: Sz-Chin Lin , Jay Taylor , Minsoung Rhee , Jennifer Foley , Wesley Cox-Muranami , Cyril Delattre , Tarun Khurana , Paul Crivelli
摘要: In one example, a flow cell includes a plurality of inlet ports sized to receive a flow of reagent from one of a plurality of reagents into the flow cell. An outlet port of the flow cell is sized to pass each flow of reagent out of the flow cell. A flow channel of the flow cell is positioned between, and in fluid communication with, each inlet port and the outlet port. The flow channel includes a manifold section and a detection section. The manifold section has a plurality of manifold branches in fluid communication with a common line, wherein each branch is connected to one of each inlet port. The detection section is in fluid communication with the common line and the outlet port. The detection section is operable to perform a plurality of different chemical reactions between the plurality of reagents and analytes positioned in the detection section.
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公开(公告)号:US20220097060A1
公开(公告)日:2022-03-31
申请号:US17550063
申请日:2021-12-14
申请人: ILLUMINA, INC.
发明人: Ali Agah , Aathavan Karunakaran , Tarun Khurana , Stanley Hong , Merek Siu , Arvin Emadi , Craig Ciesla
摘要: An apparatus includes a flow cell body, a plurality of electrodes, an integrated circuit, and an imaging assembly. The flow cell body defines one or more flow channels and a plurality of wells. Each flow channel is configured to receive a flow of fluid. Each well is fluidically coupled with the corresponding flow channel. Each well is configured to contain at least one polynucleotide. Each electrode is positioned in a corresponding well of the plurality of wells. The electrodes are operable to effect writing of polynucleotides in the corresponding wells. The integrated circuit is operable to drive selective deposition or activation of selected nucleotides to attach to polynucleotides in the wells to thereby generate polynucleotides representing machine-written data in the wells. The imaging assembly is operable to capture images indicative of one or more nucleotides in a polynucleotide.
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公开(公告)号:US11174513B2
公开(公告)日:2021-11-16
申请号:US16405547
申请日:2019-05-07
申请人: ILLUMINA, INC.
发明人: Poorya Sabounchi , Behnam Javanmardi , Tarun Khurana , Philip Paik , Yan-You Lin
IPC分类号: B01L3/00 , B01L7/00 , C12Q1/6869 , C12Q1/6806 , C12Q1/68
摘要: A stack of fluidics layers of a microfluidic cartridge for sequencing nucleic acid molecules includes a sequencing chamber layer having a sequencing chamber area configured for carrying out clustering and sequencing reactions, and a sequencing chamber bottom layer disposed under the sequencing chamber layer. The sequencing chamber bottom layer has an opening configured to hold an image sensor with the image sensor having an active area disposed under the sequencing chamber area. The sequencing chamber area spans substantially all of the active area of the image sensor. The stack of fluidics layers includes a flexible printed circuit board (PCB) layer under the sequencing chamber bottom layer, and a fluidics channels layer disposed under the flexible PCB layer. The fluidics channels layer includes fluidics channels that are configured to deliver reactants to the sequencing chamber area. The fluidics channels do not substantially overlap with the active area of the image sensor.
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公开(公告)号:US20210148872A1
公开(公告)日:2021-05-20
申请号:US17254466
申请日:2020-05-26
申请人: ILLUMINA, INC.
发明人: Tarun Khurana , Ali Agah , Aathavan Karunakaran , Stanley Hong , Merek Siu , Arvin Emadi , Craig Ciesla
IPC分类号: G01N30/74 , C12Q1/6874
摘要: An apparatus includes a flow cell body, a plurality of electrodes, an imaging assembly, and one or more barrier features. The flow cell body defines one or more flow channels and a plurality of wells defined as recesses in the floor of each flow channel. Each well is fluidically coupled with the corresponding flow channel. The flow cell body further defines interstitial surfaces between adjacent wells. Each well defines a corresponding depth. Each electrode is positioned in a corresponding well of the plurality of wells. The electrodes are to effect writing of polynucleotides in the wells. The imaging assembly is to capture images of polynucleotides written in the wells. The one or more barrier features are positioned in the wells, between the wells, or above the wells. The one or more barrier features contain reactions in each well, reduce diffusion between the wells, or reduce optical cross-talk between the wells.
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公开(公告)号:US20210146356A1
公开(公告)日:2021-05-20
申请号:US17254469
申请日:2020-05-26
申请人: ILLUMINA, INC.
发明人: Ali Agah , Aathavan Karunakaran , Tarun Khurana , Stanley Hong , Merek Siu , Arvin Emadi , Craig Ciesla
IPC分类号: B01L3/00
摘要: An apparatus includes a flow cell body, a plurality of electrodes, an integrated circuit, and an imaging assembly. The flow cell body defines one or more flow channels and a plurality of wells. Each flow channel is configured to receive a flow of fluid. Each well is fluidically coupled with the corresponding flow channel. Each well is configured to contain at least one polynucleotide. Each electrode is positioned in a corresponding well of the plurality of wells. The electrodes are operable to effect writing of polynucleotides in the corresponding wells. The integrated circuit is operable to drive selective deposition or activation of selected nucleotides to attach to polynucleotides in the wells to thereby generate polynucleotides representing machine-written data in the wells. The imaging assembly is operable to capture images indicative of one or more nucleotides in a polynucleotide.
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