Method for identifying microorganisms via mass spectrometry and score normalization

    公开(公告)号:US10546735B2

    公开(公告)日:2020-01-28

    申请号:US14361885

    申请日:2012-11-30

    申请人: bioMerieux, Inc.

    摘要: An identification by mass spectrometry of a microorganism from among reference microorganisms represented by reference data sets includes: determining a set of data of the microorganism according to a spectrum; for each reference microorganism, calculating a distance between the determined and reference sets; and calculating a probability f(m) according to relation f ⁡ ( m ) = pN ⁡ ( m ❘ μ , σ ) pN ⁡ ( m ❘ μ , σ ) + ( 1 - p ) ⁢ N ⁡ ( m ❘ μ _ , σ _ ) where: m is the distance calculated for the reference microorganism; N(m|μ,σ) is the value, for m, of a random variable modeling the distance between a reference microorganism to be identified and the reference microorganism, when the microorganism is the reference microorganism; N(m|μ,σ) is the value, for m, of a random variable modeling the distance between a microorganism to be identified and the reference microorganism, when the microorganism is not the reference microorganism; and p is a scalar in the range from 0 to 1.

    Method for identifying microorganisms by mass spectrometry

    公开(公告)号:US10541119B2

    公开(公告)日:2020-01-21

    申请号:US14361794

    申请日:2012-11-30

    申请人: Biomerieux, Inc.

    IPC分类号: H01J49/00 G16B99/00

    摘要: A method of identifying a microorganism by mass spectrometry, including acquiring at least one mass spectrum of said microorganism; for each acquired mass spectrum: detecting peaks of the spectrum in a predetermined mass range; generating a list of peaks identifying at most one peak in each interval of a predetermined subdivision of the range of mass-to-charge ratios, the width of the intervals of the subdivision logarithmically increasing along with the mass-to-charge ratio, and analyzing the list(s) of peaks obtained according to a knowledge base of previously-identified microorganisms and/or types of microorganisms.

    METHOD FOR IDENTIFYING MICROORGANISMS VIA MASS SPECTROMETRY AND SCORE NORMALIZATION
    3.
    发明申请
    METHOD FOR IDENTIFYING MICROORGANISMS VIA MASS SPECTROMETRY AND SCORE NORMALIZATION 审中-公开
    通过质谱分析和分辨率正常化识别微生物的方法

    公开(公告)号:US20140343864A1

    公开(公告)日:2014-11-20

    申请号:US14361885

    申请日:2012-11-30

    申请人: bioMerieux, Inc.

    IPC分类号: H01J49/00 G01N33/483

    摘要: An identification by mass spectrometry of a microorganism from among reference microorganisms represented by reference data sets includes: determining a set of data of the microorganism according to a spectrum; for each reference microorganism, calculating a distance between the determined and reference sets; and calculating a probability f(m) according to relation f  ( m ) = pN  ( m  μ , σ ) pN  ( m  μ , σ ) + ( 1 - p )  N  ( m  μ _ , σ _ ) where: m is the distance calculated for the reference microorganism; N(m|μ,σ) is the value, for m, of a random variable modeling the distance between a reference microorganism to be identified and the reference microorganism, when the microorganism is the reference microorganism; N(m| μ, σ) is the value, for m, of a random variable modeling the distance between a microorganism to be identified and the reference microorganism, when the microorganism is not the reference microorganism; and p is a scalar in the range from 0 to 1.

    摘要翻译: 通过参考数据组所表示的参考微生物中的微生物的质谱鉴定包括:根据光谱确定微生物的一组数据; 对于每个参考微生物,计算所确定的和参考组之间的距离; 并且根据关系式(m)= pN(mμ,&sgr;)pN(mμ,&sgr)+(1-p)N(mμ)计算概率f(m) _,&sgr; _)其中:m是参考微生物计算的距离; 当微生物是参照微生物时,N(m |μ,&sgr;)是m的值,用于建立待鉴定的参考微生物与参照微生物之间的距离的随机变量; N(m |μ,&sgr;)是当微生物不是参照微生物时,随机变量建模待鉴定微生物与参照微生物之间的距离的m值; p是0到1范围内的标量。

    METHOD FOR IDENTIFYING MICROORGANISMS BY MASS SPECTROMETRY
    5.
    发明申请
    METHOD FOR IDENTIFYING MICROORGANISMS BY MASS SPECTROMETRY 审中-公开
    通过质谱鉴定微生物的方法

    公开(公告)号:US20140358449A1

    公开(公告)日:2014-12-04

    申请号:US14361794

    申请日:2012-11-30

    申请人: BIOMERIEUX, INC.

    IPC分类号: H01J49/00 G06F19/10

    摘要: A method of identifying a microorganism by mass spectrometry, including acquiring at least one mass spectrum of said microorganism; for each acquired mass spectrum: detecting peaks of the spectrum in a predetermined mass range; generating a list of peaks identifying at most one peak in each interval of a predetermined subdivision of the range of mass-to-charge ratios, the width of the intervals of the subdivision logarithmically increasing along with the mass-to-charge ratio, and analyzing the list(s) of peaks obtained according to a knowledge base of previously-identified microorganisms and/or types of microorganisms.

    摘要翻译: 一种通过质谱鉴定微生物的方法,包括获取所述微生物的至少一个质谱; 对于每个获得的质谱:检测在预定质量范围内的光谱的峰值; 产生在质量 - 电荷比范围的预定细分的每个间隔中至多标识一个峰的峰列表,细分间隔的宽度与质荷比对数增加,并分析 根据先前确定的微生物和/或微生物类型的知识库获得的峰的列表。