The invention discloses a LNG filling system, a BOG processing system and a mobile LNG filling ship. One end of a low-temperature pump unit is connected with a liquid filling hole of a liquefied gas tank through a first pipeline; the other end of the low-temperature pump unit is connected with one end of each filling pipeline; and the other end of each filling pipeline is connected with liquid filling holes of LNG fuel tanks of a filled ship, and the low-temperature pump set and gas return holes of all LNG fuel tanks are connected with a gas return hole of the liquefied gas tank through gas return pipelines, so that a circulating path is formed. In the BOG processing system, a third pipeline connected at a gas return hole of a daily fuel tank communicates with a fourth pipeline at the gas return hole of the liquefied gas tank; a fifth pipeline connected with a fuel gas engine communicates with the third pipeline and the fourth pipeline; and an LNG filling system and the BOG processing system are arranged on a ship body of the mobile LNG filling ship; and the tail part of the ship body is provided with full-rotating counter-rotating propellers. According to the LNG filling system, the BOG processing system and the mobile LNG filling ship disclosed by the invention, high-efficiency and high safety of LNG filling and zero release of BOG are realized.