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公开(公告)号：US20200004928A1
公开(公告)日：2020-01-02
申请号：US16022835
申请日：2018-06-29
摘要： The present disclosure provides, in some embodiments, a computing device comprising an improved user interface. In some embodiments, the improved user interface enables the visualization of clinically relevant information pertaining to interacting gene variants, including therapeutic recommendations. In some embodiments, the improved user interface facilitates the contemporaneous visualization of clinically relevant information pertaining to individual gene variants and the visualization of clinically relevant information pertaining to an interaction between gene variants, including therapeutic recommendations. In some embodiments, the visualization(s), through the improved user interface, facilitates the rapid interpretation of clinically relevant information by a medical professional such that decisions regarding patient care may be made accurately and efficiently.
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公开(公告)号：US20190325040A1
公开(公告)日：2019-10-24
申请号：US15960945
申请日：2018-04-24
发明人： Omer Sagi , Avitan Gefen , Ran Taig
摘要： A DNA storage system for binary digital data. The digital data is deduplicated is encoded into a format for representation in DNA, and DNA representing the data is synthesized and stored in pools in a primary library, a hash library and a data library. The primary library stores DNA for accessing a hash object in the hash library corresponding to a hash of the data, and the hash library stores DNA for accessing a data object in the data library that contains the data. The information in the libraries includes information identifying objects, including keys, unique identifiers (UIDs), pool identifiers, and primers.
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公开(公告)号：US10431327B2
公开(公告)日：2019-10-01
申请号：US15339666
申请日：2016-10-31
发明人： Lekan Wang , Hyunghoon Cho , Abimanyu Raja , Elizabeth Caudill
IPC分类号： G06F19/26 , G06F19/28 , G06F17/30 , G06F3/0482 , G06F3/0484 , G16B45/00 , G06F16/951 , G16B50/00 , G06F3/0481 , G06Q10/10
摘要： Methods and computer apparatuses are disclosed for processing genomic data in at least partially automated workflows of modules. A method comprises: specifying a source from which nucleic acid sequence(s) are to be obtained; selecting module(s) for processing data, including at least one module for processing the one or more nucleic acid sequences; presenting, in a graphical user interface, graphical components representing the source and the module(s) as nodes within a workspace; receiving, via the graphical user interface, inputs arranging the source and the module(s) as a workflow comprising a series of nodes, the series indicating, for each particular module, that output from one of the source or another particular module is to be input into the particular module; generating an output for the workflow based upon the nucleic acid sequence(s) by processing each module in an order indicated by the series.
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公开(公告)号：US20190114390A1
公开(公告)日：2019-04-18
申请号：US16160457
申请日：2018-10-15
申请人： BioAge Labs, Inc.
摘要： A deep learning model measures functional similarities between compounds based on gene expression data for each compound. The model receives an unlabeled expression profile for a query perturbagen including transcription counts of a plurality of genes in a cell affected the query perturbagen. The model extracts an embedding of the expression profile. Using the embedding of the query perturbagen and embeddings of known perturbagens, the model determines a set of similarity scores, each indicating a likelihood that a known perturbagen has a similar effect on gene expression as the query perturbagen. The likelihood, additionally, provides a prediction that the known perturbagen and query perturbagen share pharmacological similarities. The similarity scores are ranked and, from the ranked set, at least one candidate perturbagen is determined to be pharmacologically similar to the query perturbagen. The model may further be applied to determine similarities in structure and biological protein targets between perturbagens.
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公开(公告)号：US20190066262A1
公开(公告)日：2019-02-28
申请号：US16169946
申请日：2018-10-24
申请人： Five3 Genomics, LLC
摘要： Systems and methods for dynamic visualization of genomic data are provided in which a genomic visualization system adapts presentation of information content according to scale-relevant annotations within a sequence object.
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公开(公告)号：US20190050529A1
公开(公告)日：2019-02-14
申请号：US16036204
申请日：2018-07-16
申请人： Antonios SAMIOTAKIS , Anders OHRN
发明人： Antonios SAMIOTAKIS , Anders OHRN
摘要： Systems and methods for variable fitting include communicating one or more descriptions for a system exhibiting a variable value. In response, a response consisting of a first or second indication is received from the user of the disclosed systems and methods. The first and second indications being that the one or more descriptions are respectively considered to be in a first or second class with respect to the variable. The variable value is changed based on the received response. This communicating, receiving, and changing is repeated until an exit condition is considered to exist.
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公开(公告)号：US20190018019A1
公开(公告)日：2019-01-17
申请号：US16037949
申请日：2018-07-17
发明人： Baozhen Shan , Ngoc Hieu Tran , Ming Li , Lei Xin , Xianglilan Zhang
摘要： The present systems and methods introduce deep learning to de novo peptide sequencing from tandem mass spectrometry data. The systems and methods achieve improvements in sequencing accuracy over existing systems and methods and enables complete assembly of novel protein sequences without assisting databases. The present systems and methods are re-trainable to adapt to new sources of data and provides a complete end-to-end training and prediction solution, which is advantageous given the growing massive amount of data. The systems and methods combine deep learning and dynamic programming to solve optimization problems.
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公开(公告)号：US10162934B2
公开(公告)日：2018-12-25
申请号：US14954316
申请日：2015-11-30
摘要： A computer-implemented method for data-deduplication of genome data that is in different file formats is described. Representative data from different genome file formats is conformed to a selected file format and compared. Duplicate files are identified and duplicate files are released, with at least one file copy being retained.
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公开(公告)号：US20180341745A1
公开(公告)日：2018-11-29
申请号：US15865152
申请日：2018-01-08
发明人： Kang ZHANG , Rui HOU , Lianghong ZHENG
摘要： Disclosed herein are methods, systems, platforms, non-transitory computer-readable medium, services, and kits for determining a cancer type in an individual. Also described herein include methods, systems, platforms, non-transitory computer-readable medium, and compositions for generating a CpG methylation profile database.
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公开(公告)号：US20180330048A1
公开(公告)日：2018-11-15
申请号：US15975889
申请日：2018-05-10
申请人： Corey Reaux-Savonte
发明人： Corey Reaux-Savonte
CPC分类号： G06F19/18 , C12Q1/6869 , G06F19/12 , G06F19/20 , G06F19/22 , G06F19/24 , G06F19/28 , G06N3/086 , G06N3/123 , G06N3/126 , G06N99/005
摘要： The components and structure for a genome created for the purpose of the evolutionary development of artificial intelligence systems/machines without human intervention.
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