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公开(公告)号:US10975431B2
公开(公告)日:2021-04-13
申请号:US16730949
申请日:2019-12-30
发明人: Victor E. Velculescu , Stephen Cristiano , Alessandro Leal , Jillian A. Phallen , Jacob Fiksel , Vilmos Adleff , Robert B. Scharpf
IPC分类号: C12Q1/68 , C12P19/34 , C12Q1/6874 , G16B40/00 , G16B30/00 , C12Q1/6886
摘要: This document relates to methods and materials for assessed, monitored, and/or treated mammals (e.g., humans) having cancer. For example, methods and materials for identifying a mammal as having cancer (e.g., a localized cancer) are provided. For example, methods and materials for assessing, monitoring, and/or treating a mammal having cancer are provided.
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公开(公告)号:US20170327898A1
公开(公告)日:2017-11-16
申请号:US15596517
申请日:2017-05-16
发明人: Victor Velculescu , Eniko Papp , Vilmos Adleff
CPC分类号: C12Q1/6886 , C12Q2600/112 , C12Q2600/118 , C12Q2600/156 , G06F19/3481 , G16B10/00 , G16B20/00 , G16H50/30
摘要: The evolutionary origin of high-grade serous ovarian carcinoma remains largely unknown. The vast majority of tumor-specific genomic alterations from ovarian cancers are present in fallopian tube STIC lesions (average of 55 sequence alterations per tumor), including those affecting TP53, BRCA1, BRCA2 or PTEN genes. A quantitative evolutionary analysis indicated that tumors of the fallopian tube were the likely precursors of ovarian cancer and could directly give rise to metastatic lesions. These analyses suggest that there may be less than two years between the development of a STIC and the initiation of fallopian tube tumors, ovarian tumors or other metastases. Thus there may be a short window between the development of a STIC and the initiation of ovarian tumors or other metastases, highlighting the importance of the prevention, early detection and therapeutic intervention of this disease.
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公开(公告)号:US20240344136A1
公开(公告)日:2024-10-17
申请号:US18516168
申请日:2023-11-21
IPC分类号: C12Q1/6886 , A61K39/00 , A61K39/395 , A61P35/00 , C07K16/28 , C12Q1/68
CPC分类号: C12Q1/6886 , A61K39/395 , A61P35/00 , C07K16/2863 , C12Q1/68 , A61K2039/505 , A61K2039/55 , C07K2317/24 , C07K2317/76 , C12Q2600/106 , C12Q2600/156 , C12Q2600/158
摘要: Recent large-scale analyses have demonstrated that the genomic landscape of human cancer is complex and variable among individuals of the same tumor type. Such underlying genetic differences may in part be responsible for the varying therapeutic responses observed in cancer patients. To examine the effect of somatic genetic changes in colorectal cancer on sensitivity to a common targeted therapy, we performed complete exome sequence and copy number analyses of 129 tumors that were KRAS wild-type and analyzed their response to anti-EGFR antibody blockade in patient-derived tumorgraft models. In addition to previously identified genes, we detected mutations in ERBB2, EGFR, FGFR1, PDGFRA, and MAP2K1 as potential mechanisms of primary resistance to this therapy. Alterations in the ectodomain of EGFR were identified in patients with acquired resistance to EGFR blockade. Amplifications and sequence changes in the tyrosine kinase receptor adaptor gene IRS2 were identified in tumors with increased sensitivity to anti-EGFR therapy. Therapeutic resistance to EGFR blockade could be overcome in tumorgraft models through combinatorial therapies targeting actionable genes. These analyses provide a systematic approach to evaluate response to targeted therapies in human cancer, highlight additional mechanisms of responsiveness to anti-EGFR therapies, and provide additional avenues for intervention in the management of colorectal cancer.
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公开(公告)号:US20210254152A1
公开(公告)日:2021-08-19
申请号:US17204892
申请日:2021-03-17
发明人: Victor E. Velculescu , Stephen Cristiano , Alessandro Leal , Jillian A. Phallen , Jacob Fiksel , Vilmos Adleff , Robert B. Scharpf
IPC分类号: C12Q1/6874 , G16B40/00 , G16B30/00 , C12Q1/6886
摘要: This document relates to methods and materials for assessed, monitored, and/or treated mammals (e.g., humans) having cancer. For example, methods and materials for identifying a mammal as having cancer (e.g., a localized cancer) are provided. For example, methods and materials for assessing, monitoring, and/or treating a mammal having cancer are provided.
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公开(公告)号:US20180155770A1
公开(公告)日:2018-06-07
申请号:US15552076
申请日:2016-02-18
发明人: Victor Velculescu , Mark Sausen , Vilmos Adleff , Jillian Phallen
IPC分类号: C12Q1/6827 , C12Q1/6886 , C12Q1/6816
CPC分类号: C12Q1/6827 , C12Q1/6816 , C12Q1/6886 , C12Q2600/106 , C12Q2600/112 , C12Q2600/118 , C12Q2600/156
摘要: Pancreatic adenocarcinoma has the worst overall mortality of any solid tumor, with only 7% of patients surviving after 5 years. To evaluate the clinical implications of genomic alterations in this low cellularity tumor type, we deeply sequenced the genomes of 101 enriched pancreatic adenocarcinomas from patients who underwent potentially curative resections and used non-invasive approaches to examine tumor specific mutations in the circulation of these patients. These analyses revealed somatic mutations in chromatin regulating genes including MLL and ARID1A in 20% of patients that were associated with improved survival. Liquid biopsy analyses of cell free plasma DNA revealed that 43% of patients with localized disease had detectable circulating tumor DNA (ctDNA) in their blood at the time of diagnosis. Detection of ctDNA after resection predicted clinical relapse and poor outcome, and disease recurrence by ctDNA was detected 6.5 months earlier than with standard CT imaging.
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公开(公告)号:US11845994B2
公开(公告)日:2023-12-19
申请号:US17225717
申请日:2021-04-08
IPC分类号: C12Q1/6886 , A61K39/395 , C07K16/28 , C12Q1/68 , A61P35/00 , A61K39/00
CPC分类号: C12Q1/6886 , A61K39/395 , A61P35/00 , C07K16/2863 , C12Q1/68 , A61K2039/505 , A61K2039/55 , C07K2317/24 , C07K2317/76 , C12Q2600/106 , C12Q2600/156 , C12Q2600/158
摘要: Recent large-scale analyses have demonstrated that the genomic landscape of human cancer is complex and variable among individuals of the same tumor type. Such underlying genetic differences may in part be responsible for the varying therapeutic responses observed in cancer patients. To examine the effect of somatic genetic changes in colorectal cancer on sensitivity to a common targeted therapy, we performed complete exome sequence and copy number analyses of 129 tumors that were KRAS wild-type and analyzed their response to anti-EGFR antibody blockade in patient-derived tumorgraft models. In addition to previously identified genes, we detected mutations in ERBB2, EGFR, FGFR1, PDGFRA, and MAP2K1 as potential mechanisms of primary resistance to this therapy. Alterations in the ectodomain of EGFR were identified in patients with acquired resistance to EGFR blockade. Amplifications and sequence changes in the tyrosine kinase receptor adaptor gene IRS2 were identified in tumors with increased sensitivity to anti-EGFR therapy. Therapeutic resistance to EGFR blockade could be overcome in tumorgraft models through combinatorial therapies targeting actionable genes. These analyses provide a systematic approach to evaluate response to targeted therapies in human cancer, highlight additional mechanisms of responsiveness to anti-EGFR therapies, and provide additional avenues for intervention in the management of colorectal cancer.
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公开(公告)号:US20210108256A1
公开(公告)日:2021-04-15
申请号:US17080201
申请日:2020-10-26
IPC分类号: C12Q1/6827 , C12Q1/6886 , C12Q1/6816
摘要: Pancreatic adenocarcinoma has the worst overall mortality of any solid tumor, with only 7% of patients surviving after 5 years. To evaluate the clinical implications of genomic alterations in this low cellularity tumor type, we deeply sequenced the genomes of 101 enriched pancreatic adenocarcinomas from patients who underwent potentially curative resections and used non-invasive approaches to examine tumor specific mutations in the circulation of these patients. These analyses revealed somatic mutations in chromatin regulating genes including MLL and ARID1A in 20% of patients that were associated with improved survival. Liquid biopsy analyses of cell free plasma DNA revealed that 43% of patients with localized disease had detectable circulating tumor DNA (ctDNA) in their blood at the time of diagnosis. Detection of ctDNA after resection predicted clinical relapse and poor outcome, and disease recurrence by ctDNA was detected 6.5 months earlier than with standard CT imaging.
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公开(公告)号:US20200149118A1
公开(公告)日:2020-05-14
申请号:US16730949
申请日:2019-12-30
发明人: Victor E. Velculescu , Stephen Cristiano , Alessandro Leal , Jillian A. Phallen , Jacob Fiksel , Vilmos Adleff , Robert B. Scharpf
IPC分类号: C12Q1/6886
摘要: This document relates to methods and materials for assessed, monitored, and/or treated mammals (e.g., humans) having cancer. For example, methods and materials for identifying a mammal as having cancer (e.g., a localized cancer) are provided. For example, methods and materials for assessing, monitoring, and/or treating a mammal having cancer are provided.
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公开(公告)号:US20220325343A1
公开(公告)日:2022-10-13
申请号:US17842893
申请日:2022-06-17
发明人: Victor E. Velculescu , Stephen Cristiano , Alessandro Leal , Jillian A. Phallen , Jacob Fiksel , Vilmos Adleff , Robert B. Scharpf
IPC分类号: C12Q1/6874 , G16B40/00 , G16B30/00 , C12Q1/6886 , C12N15/10 , G16B40/30 , G16B50/20
摘要: This document relates to methods and materials for assessed, monitored, and/or treated mammals (e.g., humans) having cancer. For example, methods and materials for identifying a mammal as having cancer (e.g., a localized cancer) are provided. For example, methods and materials for assessing, monitoring, and/or treating a mammal having cancer are provided.
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公开(公告)号:US20210301352A1
公开(公告)日:2021-09-30
申请号:US17225717
申请日:2021-04-08
IPC分类号: C12Q1/6886 , A61K39/395 , C07K16/28 , C12Q1/68 , A61P35/00
摘要: Recent large-scale analyses have demonstrated that the genomic landscape of human cancer is complex and variable among individuals of the same tumor type. Such underlying genetic differences may in part be responsible for the varying therapeutic responses observed in cancer patients. To examine the effect of somatic genetic changes in colorectal cancer on sensitivity to a common targeted therapy, we performed complete exome sequence and copy number analyses of 129 tumors that were KRAS wild-type and analyzed their response to anti-EGFR antibody blockade in patient-derived tumorgraft models. In addition to previously identified genes, we detected mutations in ERBB2, EGFR, FGFR1, PDGFRA, and MAP2K1 as potential mechanisms of primary resistance to this therapy. Alterations in the ectodomain of EGFR were identified in patients with acquired resistance to EGFR blockade. Amplifications and sequence changes in the tyrosine kinase receptor adaptor gene IRS2 were identified in tumors with increased sensitivity to anti-EGFR therapy. Therapeutic resistance to EGFR blockade could be overcome in tumorgraft models through combinatorial therapies targeting actionable genes. These analyses provide a systematic approach to evaluate response to targeted therapies in human cancer, highlight additional mechanisms of responsiveness to anti-EGFR therapies, and provide additional avenues for intervention in the management of colorectal cancer.
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