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公开(公告)号:US20240101980A1
公开(公告)日:2024-03-28
申请号:US18521466
申请日:2023-11-28
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Daniel MAZUR , Sihong CHEN , Peter VANDER HORN , Eileen TOZER , Guobin LUO , Joshua SHIRLEY , Kevin HEINEMANN
CPC classification number: C12N9/1252 , C12Q1/686 , C12Y207/07007
Abstract: The present disclosure provides compositions, methods, kits, systems and apparatus that are useful for nucleic acid polymerization. In particular, recombinant polymerases and biologically active fragments thereof are provided that allow for nucleic acid amplification. In some aspects, the disclosure provides recombinant polymerases that yield lower systematic error rates and/or improved accuracy, when used in sequencing by synthesis reactions as compared to a control polymerase. In one aspect, the disclosure relates to recombinant polymerases useful for nucleic acid sequencing, genotyping, copy number variation analysis, paired-end sequencing and other forms of genetic analysis. In another aspect, the recombinant polymerases are useful for the amplification of nucleic acid templates during PCR, emPCR, isothermal amplification, recombinase polymerase amplification, rolling circle amplification, strand displacement amplification and proximity ligation amplification. In some aspects, the disclosure relates to recombinant polymerases useful for the generation of nucleic acid libraries and/or nucleic acid templates.
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公开(公告)号:US20170260512A1
公开(公告)日:2017-09-14
申请号:US15481858
申请日:2017-04-07
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Peter VANDER HORN , Daniel MAZUR , Theo NIKIFOROV , Mindy LANDES , Eileen TOZER
CPC classification number: C12N9/1252 , C12Q1/686 , C12Q1/6869
Abstract: The present disclosure provides compositions, methods, kits, systems and apparatus that are useful for nucleic acid polymerization. In particular, modified polymerases and biologically active fragments thereof are provided that allow for nucleic acid amplification. In some aspects, the disclosure provides modified polymerases having lower systematic error as compared to a reference polymerase. In one aspect, the disclosure relates to modified polymerases useful for nucleic acid sequencing, genotyping, copy number variation analysis, paired-end sequencing and other forms of genetic analysis. In some aspects, the disclosure relates to modified polymerases useful for the generation of nucleic acid libraries or nucleic acid templates. In some aspects, the disclosure relates to the identification of homologous amino acid mutations that can be transferred across classes or families of polymerases to provide novel polymerases with altered properties.
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公开(公告)号:US20200277580A1
公开(公告)日:2020-09-03
申请号:US16850629
申请日:2020-04-16
Applicant: Life Technologies Corporation
Inventor: Peter VANDER HORN , Theo NIKIFOROV , Guobin LUO , Mindy LANDES , Daniel MAZUR , Eileen TOZER , Tommie LINCECUM
IPC: C12N9/12 , C12Q1/6844 , C12Q1/686
Abstract: The present disclosure provides compositions, methods, kits, systems and apparatus that are useful for nucleic acid polymerization. In particular, modified polymerases and biologically active fragment thereof are provided that allow for nucleic acid amplification. In one aspect, the disclosure relates to modified polymerases useful for nucleic acid sequencing, genotyping, copy number variation analysis, paired-end sequencing and other forms of genetic analysis. In some aspects, the disclosure relates to modified polymerases useful for the generation of nucleic acid libraries or nucleic acid templates for use in various downstream processes. In some aspects, the disclosure relates to the identification of homologous amino acid mutations that can be transferred across classes or families of polymerases to provide novel polymerases with altered catalytic properties. In some aspects, the disclosure provides modified polymerases having enhanced catalytic properties as compared to a reference polymerase.
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公开(公告)号:US20140308730A1
公开(公告)日:2014-10-16
申请号:US14087307
申请日:2013-11-22
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Theo NIKIFOROV , Daniel MAZUR , Xinzhan PENG , Tommie Lloyd LINCECUM , Yuri BELOSLUDTSEV , Howard REESE , Dmitriy GREMYACHINSKIY , Roman ROZHKOV , John MAURO , Joseph BEECHEM , Eric TULSKY , Imad NAASANI , Kari HALEY , Joseph TREADWAY
IPC: C12N9/12
CPC classification number: C12Q1/6869 , C07H19/20 , C12N9/1241 , C12N9/1252 , C12N9/96 , C12Q1/6818 , C12Y207/07 , C12Y207/07007 , G01N21/6428 , G01N33/582 , G01N2021/6432
Abstract: Disclosed herein are conjugates comprising a biomolecule linked to a label that have biological activity and are useful in a wide variety of biological applications. For example, provided herein are polymerase-nanoparticle conjugates including a polymerase linked to a nanoparticle, wherein the conjugate has polymerase activity. Such conjugates can exhibit reduced aggregation and improved stochiometries wherein the average biomolecule:nanoparticle ratio approaches or equals 1:1. Also disclosed herein are improved methods for preparing such conjugates, and methods and systems for using such conjugates in biological applications such as nucleotide incorporation, primer extension and single molecule sequencing.
Abstract translation: 本文公开了包含连接到具有生物活性并可用于多种生物应用的标签的生物分子的缀合物。 例如,本文提供了聚合酶 - 纳米颗粒缀合物,其包括与纳米颗粒连接的聚合酶,其中缀合物具有聚合酶活性。 这样的缀合物可以表现出减少的聚集和改进的沉淀物,其中平均生物分子:纳米颗粒比接近或等于1:1。 本文还公开了制备这种缀合物的改进方法,以及在生物应用中使用这种缀合物的方法和系统,例如核苷酸掺入,引物延伸和单分子测序。
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公开(公告)号:US20220315917A1
公开(公告)日:2022-10-06
申请号:US17302674
申请日:2021-05-10
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Mark ANDERSEN , Daniel MAZUR , Sihong CHEN , Guobin LUO , Xinzhan PENG
IPC: C12N15/10 , C12Q1/6806 , C12Q1/6853 , C12Q1/6855
Abstract: Provided are methods for preparing a library of target nucleic acid sequences, as well as compositions and uses therefor. Methods comprise contacting a nucleic acid sample with a plurality of adaptors capable of amplification of one or more target nucleic acid sequences under conditions wherein the target nucleic acid(s) undergo a first amplification; digesting the resulting first amplification products; repairing the digested target amplicons; and amplifying the repaired products in a second amplification, thereby producing a library of target nucleic acid sequence. Each of the plurality of adaptor compositions comprise a handle and a targeted nucleic acid sequence and optionally one or more tag sequences. Provided methods may be carried out in a single, addition only workflow reaction, allowing for rapid production of highly multiplexed targeted libraries, optionally including unique tag sequences. Resulting library compositions are useful for a variety of applications, including sequencing applications.
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公开(公告)号:US20200299655A1
公开(公告)日:2020-09-24
申请号:US16894469
申请日:2020-06-05
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Peter VANDER HORN , Daniel MAZUR , Theo NIKIFOROV , Mindy LANDES , Eileen TOZER
IPC: C12N9/12 , C12Q1/686 , C12Q1/6869
Abstract: The present disclosure provides compositions, methods, kits, systems and apparatus that are useful for nucleic acid polymerization. In particular, modified polymerases and biologically active fragments thereof are provided that allow for nucleic acid amplification. In some aspects, the disclosure provides modified polymerases having lower systematic error as compared to a reference polymerase. In one aspect, the disclosure relates to modified polymerases useful for nucleic acid sequencing, genotyping, copy number variation analysis, paired-end sequencing and other forms of genetic analysis. In some aspects, the disclosure relates to modified polymerases useful for the generation of nucleic acid libraries or nucleic acid templates. In some aspects, the disclosure relates to the identification of homologous amino acid mutations that can be transferred across classes or families of polymerases to provide novel polymerases with altered properties.
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公开(公告)号:US20190270974A1
公开(公告)日:2019-09-05
申请号:US16415063
申请日:2019-05-17
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Daniel MAZUR , Peter VANDER HORN , Eileen TOZER , Sihong CHEN , Guobin LUO , Joshua SHIRLEY , Kevin HEINEMANN
Abstract: The present disclosure provides compositions, methods, kits, systems and apparatus that are useful for nucleic acid polymerization. In particular, recombinant polymerases and biologically active fragments thereof are provided that allow for nucleic acid amplification. In some aspects, the disclosure provides recombinant polymerases that yield lower systematic error rates and/or improved accuracy, when used in sequencing by synthesis reactions as compared to a control polymerase. In one aspect, the disclosure relates to recombinant polymerases useful for nucleic acid sequencing, genotyping, copy number variation analysis, paired-end sequencing and other forms of genetic analysis. In another aspect, the recombinant polymerases are useful for the amplification of nucleic acid templates during PCR, emPCR, isothermal amplification, recombinase polymerase amplification, rolling circle amplification, strand displacement amplification and proximity ligation amplification. In some aspects, the disclosure relates to recombinant polymerases useful for the generation of nucleic acid libraries and/or nucleic acid templates.
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公开(公告)号:US20160265045A1
公开(公告)日:2016-09-15
申请号:US15169854
申请日:2016-06-01
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Stephen P. HENDRICKS , Michael PHELAN , Marian PERIS , Cheng-Yao CHEN , Daniel MAZUR , Xinzhan PENG , Amy CASTILLO
CPC classification number: C12Q1/6869 , C07H19/20 , C12N9/1241 , C12N9/1252 , C12N9/96 , C12Q1/6818 , C12Y207/07 , C12Y207/07007 , G01N21/6428 , G01N33/582 , G01N2021/6432
Abstract: Disclosed herein are modified polymerase compositions exhibiting altered polymerase activity, which can be useful in a variety of biological applications. Also disclosed herein are methods of making and using such compositions. In some embodiments, the compositions exhibit altered properties that can enhance their utility in a variety of biological applications. Such altered properties, can include, for example, altered nucleotide binding affinities, altered nucleotide incorporation kinetics, altered photostability and/or altered nanoparticle tolerance, as well as a range of other properties as disclosed herein.
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公开(公告)号:US20150247136A1
公开(公告)日:2015-09-03
申请号:US14710160
申请日:2015-05-12
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Stephen P. HENDRICKS , Michael PHELAN , Marian PERIS , Cheng-Yao CHEN , Daniel MAZUR , Xinzhan PENG , Amy CASTILLO
IPC: C12N9/12
CPC classification number: C12Q1/6869 , C07H19/20 , C12N9/1241 , C12N9/1252 , C12N9/96 , C12Q1/6818 , C12Y207/07 , C12Y207/07007 , G01N21/6428 , G01N33/582 , G01N2021/6432
Abstract: Disclosed herein are modified polymerase compositions exhibiting altered polymerase activity, which can be useful in a variety of biological applications. Also disclosed herein are methods of making and using such compositions. In some embodiments, the compositions exhibit altered properties that can enhance their utility in a variety of biological applications. Such altered properties, can include, for example, altered nucleotide binding affinities, altered nucleotide incorporation kinetics, altered photostability and/or altered nanoparticle tolerance, as well as a range of other properties as disclosed herein.
Abstract translation: 本文公开了显示改变的聚合酶活性的修饰聚合酶组合物,其可用于多种生物应用。 本文还公开了制备和使用这些组合物的方法。 在一些实施方案中,组合物显示改变的性质,其可以增强其在各种生物应用中的效用。 这种改变的性质可以包括例如改变的核苷酸结合亲和力,改变的核苷酸掺入动力学,改变的光稳定性和/或改变的纳米颗粒耐受性,以及本文公开的一系列其它性质。
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公开(公告)号:US20240067941A1
公开(公告)日:2024-02-29
申请号:US18486337
申请日:2023-10-13
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Peter VANDER HORN , Theo NIKIFOROV , Daniel MAZUR , Eileen TOZER , Mindy LANDES
IPC: C12N9/12 , C12Q1/686 , C12Q1/6869
CPC classification number: C12N9/1252 , C12Q1/686 , C12Q1/6869
Abstract: The present disclosure provides compositions, methods, kits, systems and apparatus that are useful for nucleic acid polymerization. In particular, modified polymerases and biologically active fragments thereof are provided that allow for nucleic acid amplification. In some aspects, the disclosure provides modified polymerases having lower systematic error as compared to a reference polymerase. In one aspect, the disclosure relates to modified polymerases useful for nucleic acid sequencing, genotyping, copy number variation analysis, paired-end sequencing and other forms of genetic analysis. In some aspects, the disclosure relates to modified polymerases useful for the generation of nucleic acid libraries or nucleic acid templates. In some aspects, the disclosure relates to the identification of homologous amino acid mutations that can be transferred across classes or families of polymerases to provide novel polymerases with altered properties.
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