A system for controlling a motor includes a motor having a plurality of phases, each phase comprising a coil having a first end coupled to a motor neutral point. A motor driver circuit is coupled to a second end of each coil to provide power to each coil. A motor controller circuit is coupled to the motor driver circuit to control the power that is provided to the motor. A comparator is coupled to compare a voltage at the motor neutral point to a voltage at the second end of each coil to detect a back-EMF polarity and produce a polarity signal representing the back-EMF polarity. A back-EMF filter circuit is coupled to receive the polarity signal and invert the polarity signal if the polarity signal does not match an expected value.