METHOD AND APPARATUS FOR DESIGNING LIGAND MOLECULES

    公开(公告)号:US20250157594A1

    公开(公告)日:2025-05-15

    申请号:US18839008

    申请日:2023-02-08

    Abstract: According to embodiments of the present disclosure, a method, apparatus, device, storage medium, and program product for designing ligand molecules are provided. The method described herein comprises: editing a first 2D molecular structure to determine a second 2D molecular structure, the editing at least comprising: deleting a 2D structural fragment from the first 2D molecular structure, or adding a 2D structural fragment to the first 2D molecular structure; determining a set of candidate 3D molecular structures corresponding to the second 2D molecular structure based on a first 3D molecular structure corresponding to the first 2D molecular structure and the editing; determining a second 3D molecular structure corresponding to the second 2D molecular structure based on a binding capacity between the set of candidate 3D molecular structures and a target molecule; and determining a target structure of a ligand molecule for the target molecule based on the second 3D molecular structure. According to embodiments of the present disclosure, the generation of subsequent 3D molecular structures can be constrained based on the 3D molecular structure of the previous state, thereby improving the efficiency of designing ligand molecules.

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