Method and system for personalizing a chip, intended to be integrated into a smart card, comprising a tester associated to an FPGA device connected to the chip, the chip being part of a wafer comprising a plurality of chips and a disposable hardware module for verifying presence of the chip on the wafer. The tester sends a first secret code to the FPGA device, which commands the chip to initiate a test mode activation. The FPGA device encrypts a second secret code by using a secret encryption algorithm parameterized with a random number received from the chip and the first secret code to obtain a first cryptogram which is sent to the chip. The chip determines a second cryptogram by carrying out a Boolean function over a result obtained by decryption of the first cryptogram using the inverse algorithm parameterized with the random number and the first secret code. The second cryptogram is compared with a result obtained by carrying out the Boolean function over the second secret code temporarily stored on the chip. The FPGA device personalizes the chip only if the second cryptogram matches the calculated result.