Method and apparatus for tax refund allocation in tax programs. A tax program may include a tax refund allocation component and user interface that allows a taxable entity to allocate portions of a refund from one tax authority to pay taxes due to another tax authority. The component and user interface may also be used to allocate portions of tax refunds to other institutions than tax authorities. Once the tax refund allocation process is completed, a message or messages indicating the allocation instructions may be sent to a financial institution that acts as an intermediary between the taxable entity, the tax authority(s), and the other institutions. The financial institution may receive the tax refund from the tax authority and distribute the portions of the refund to the other tax authorities and/or institutions as directed by the received allocation instructions.