A control system comprises a particulate matter (PM) filter, an electric heater, a first heating module, and a second heating module. The PM filter includes M zones that filter PM from exhaust gas. The electric heater includes M segments corresponding to the M zones that heat exhaust gas input to selected ones of the M zones when activated. The first heating module activates N of the M segments to heat exhaust gas input to N of the M zones to regenerate the N zones. The second heating module operates in one of a first mode and a second mode to regenerate other ones of the M zones after the N zones are regenerated. The first mode includes adjusting an air-fuel ratio of the exhaust gas. The second mode includes activating other ones of the M segments to heat exhaust gas input to other ones of the M zones.