Disclosed herein is a method and system for dynamically generating a secure navigation path for navigation of an autonomous vehicle. The method comprises detecting disproportional acceleration of the autonomous vehicle when the autonomous vehicle is navigating from a source point to a destination point based on a predefined trajectory plan. The method comprises determining direction values of the autonomous vehicle for reaching a secure path point in the predefined trajectory plan. Based on the determined direction values, distance values are determined. The method includes detecting position of the secure path point for navigation of the autonomous vehicle based on the determined direction values and the distance values. The present disclosure uses secure path point to realign the autonomous vehicle in the predefined trajectory plan to overcome the disproportional acceleration of the autonomous vehicle due to narrow roads, upward slope, or downward slope.