The health monitoring toilet system includes an extendable, retractable, and rotatable wand with sensors on the head section. The sensors may include a variety of cameras and gas sensors for inspecting a user's urogenital, perineal, and anal region for health assessment. The wand may comprise a bidet wand. The bidet wand may also dispense cleansing and therapeutic substances. The toilet system may include a controller which may store the sensor readings as well as protocols for moving the wand to acquire optimal sensor readings. The controller may be accessible by a healthcare provider for diagnostic and treatment purposes. The toilet system may identify each user to store sensor reading acquired for different users in the controller.