The invention provides a bilateral matching-based application and distribution system and method for the anchoring grounds between ships and the bank. The system comprises an anchoring ground applying system, a port information library, an anchoring ground information library, and a bank base anchoring ground resource matching system. The anchoring ground applying system is used for managing self ship information, transmitting an anchoring ground applying request, receiving a list of currently available anchoring ground resources, and transmitting the anchoring ground information selected according to the list. The bank base anchoring ground resource matching system is used for receiving the anchoring ground applying request, distributing and scheduling the current anchoring grounds according to the anchoring ground applying request, the contents of the anchoring ground information library and a preset algorithm flow to obtain the list of the currently available anchoring ground resources, transmitting the list to the anchoring ground applying system, receiving the anchoring ground information selected by the anchoring ground applying system from the list, and transmitting the selected anchoring ground information to the anchoring ground library for updating. The system has the advantages that on the basis of bilateral matching, dimensionless linear weight sum is used to optimize the available anchoring grounds provided for to-be-moored ships, and appropriate available anchoring grounds can be provided for the to-be-moored ships.