A multistage control method of a flow rate control valve which is opened or closed when a DC motor rotates. The method includes dividing angular speed limit areas of the DC motor depending on stages based on limit values so that angular speed values of the DC motor are to be scheduled depending on the stages and controlling the DC motor to rotate at a determined angular speed value depending on a corresponding angular speed instruction to the DC motor within one angular speed limit area. When the angular speed value of the DC motor is outside a limit value of the corresponding angular speed limit area, the DC motor rotates at a determined angular speed value until reaching outside a limit value of the corresponding limit area depending on a corresponding angular speed instruction to the DC motor within an angular speed limit area of the next stage.