The present application provides a method of operating a dual gas fuel delivery system comprising selecting a manifold and fuel flow split; setting the stroke of a high-energy gas control valve based on the fuel split; measuring the primary manifold nozzle pressure ratio across a primary manifold nozzle outlet; comparing the primary manifold nozzle pressure ratio against a primary manifold specification limit; adjusting the stroke of a primary low energy gas control valve to maintain the pressure ratio across the primary manifold nozzle outlet within the primary manifold specification limit; measuring the secondary manifold nozzle pressure ratio across a secondary manifold nozzle outlet; comparing the secondary manifold nozzle pressure ratio against a secondary manifold specification limit; and adjusting the stroke of a secondary low energy gas control valve to maintain the pressure ratio across the secondary manifold nozzle outlet within the secondary manifold specification limit.