A method for forming an antifuse interconnect structure, for a one-time fusible link, to be used with field-programmable gate arrays, has been developed. The process features the use of an amorphous silicon layer, used as the antifuse layer, with the amorphous silicon layer protected by a thin barrier layer, during the patterning procedure. The protected antifuse layer results in a reproducible thickness, and thus reproducible pulsing voltages, needed for rupturing of the antifuse layer. Planarization of an underlying metal plug, via a conductor layer refill procedure, offers a smooth top surface, flush with the top surface of the adjacent interlevel dielectric layer, for the overlying antifuse layer.