A system and method for transporting passengers via uncrewed aircraft systems (UAS) receives passenger requests for transport between origin and destination points. Based on the request a transport plan is generated for each passenger, identifying the passenger, assigning a UAS and including a flight plan (which includes flight instructions and a communications plan for the UAS control system). Based on the transport plan one or more encoded flight plan datasets are generated. Each encoded dataset is downloadable to and displayable by the passenger's portable computing device, and scannable and decodable by reader devices at the origin and destination ports and aboard the UAS. Scanning an encoded dataset both grants the passenger access to the origin port and UAS and confirms the passenger's presence. Further, each assigned UAS downloads from the decoded flight plan data the necessary configuration data to fulfill its portion/s of the flight plan.