A mainlobe detection process can include a number of tests that are performed to define when the monopulse antenna system will transition from open loop scanning to closed loop scanning and then to tracking. A hybrid tracking technique is also provided which adaptively discovers and corrects for phase alignment error. Magnitude-only tracking can be performed initially to locate the nulls in the azimuth and elevation ratios and to identify the magnitudes of these ratios at these nulls. Phase tracking can be then performed. During phase tracking, phase corrections can be repeatedly applied to the azimuth and elevation difference channels to correct any phase error that may exist. During this process, the magnitudes of the ratios can be used to determine how the phase corrections should be adjusted. Once the hybrid tracking process is complete, the monopulse antenna system is properly phase-aligned and phase tracking will be correctly employed.