A liquid discharging apparatus, having a head with nozzles, a scanning assembly, a conveyer, and a controller, is provided. The controller is configured to determine whether the nozzles are to be flushed in a moving action which accompanies a discharging action, if the controller determines the nozzles are not to be flushed in the moving action, conduct the moving action to move the head at a first acceleration rate; if the controller determines the nozzles are to be flushed in the moving action, determine whether a distance between a flushing range and a discharging range is greater than or equal to a predetermined distance; and if the controller determines the distance is greater than or equal to the predetermined distance, conduct the moving action to move the head at a second acceleration rate and control the head to discharge liquid for flushing the nozzles.