A frequency-modulated spectrometry (FMS) output is used to stabilize an atomic clock by serving as an error signal to regulate the clock's oscillator frequency. Rubidium 87 atoms are localized within a hermetically sealed cell using an optical (e.g., magneto-optical) trap. The oscillator output is modulated by a sinusoidal radio frequency signal and the modulated signal is then frequency doubled to provide a modulated 788 nm probe signal. The probe signal excites the atoms, so they emit 775.8 nm fluorescence. A spectral filter is used to block 788 nm scatter from reaching a photodetector, but also blocks 775.8 nm fluorescence with an angle of incidence larger than 8° relative to a perpendicular to the spectral filter. The localized atoms lie within a conical volume defined by the 8° effective angle of incidence so an FMS output with a high signal-to-noise ratio is obtained.