A system and method for performing accelerated k-space shift correction calibration scans for non-Cartesian trajectories is provided. The method can include applying an MRI sequence, performing a calibration scan based on the MRI sequence using the non-Cartesian trajectory to acquire k-space shift data, wherein one or more partitions are skipped during the calibration scan, interpolating the skipped one or more partitions using the k-space shift data from adjacent partitions, and calibrating the MRI system using the k-space shift data and the interpolated k-space shift data. In some embodiments, an acceleration factor Acc can be defined and the calibration scan acquires k-space shift data for only one partition in every Acc partitions.