A fuel tank venting system for a hybrid vehicle includes a first flow path configured to deliver fuel vaporized from a fuel tank to a canister, a second flow path configured to deliver air used for cooling a high voltage battery to the canister, a first three-way valve disposed on the second flow path and configured to control opening and closing of a first discharge port for releasing pressure of the fuel tank, a second three-way valve disposed on the second flow path and configured to control opening and closing of a second discharge port for flowing the air used for cooling the high voltage battery into the canister or discharging the air used for cooling the high voltage battery outside the vehicle, and a controller configured to control the first three-way valve and the second three-way valve.