The embodiment of the application provides a wind measurement data processing system. The system is used for effectively improving accuracy of wind energy resource analysis, and includes an input platform, a data parsing platform, a data preprocessing platform, a meteorological correction platform and a data analysis report generation platform. The input platform is used for receiving a target-wind-measurement-tower number input by a user. The data analysis platform is used for parsing all wind measurement data files of a target wind tower to determine the to-be-processed wind measurement data. The data preprocessing platform is used for preprocessing the to-be-processed wind measurement data to determine preprocessed wind measurement data when an integrity rate of the to-be-processed windmeasurement data is less than a first preset threshold value and/or a validness rate of the to-be-processed wind measurement data is less than a second preset threshold value. The meteorological correction platform is used for carrying out meteorological data correction on the preprocessed wind measurement data to determine target wind measurement data. The data analysis report generation platform is used for generating a wind measurement data analysis report of the target wind measurement tower according to the target wind measurement data.