Disclosed is a charging method and system based on a SDN EPC network, which includes: receiving, by a controller, a charging rule from a charging rule generator, and establishing, through binding, a correspondence between a flow table of the controller and the charging rule; setting, by the controller, entries for the flow table bound to the charging rule, and sending the set flow table to a UGW; and receiving, by the controller, a statistical result, reported from the UGW, regarding traffic and/or duration consumed by a service in the flow table, and charging for the service according to the statistical result and the charging rule bound to the flow table.